|Table of Contents|

Improvement of the Chromosome-based Recombineering System(PDF)

《南京师大学报(自然科学版)》[ISSN:1001-4616/CN:32-1239/N]

Issue:
2013年01期
Page:
99-103
Research Field:
生命科学
Publishing date:

Info

Title:
Improvement of the Chromosome-based Recombineering System
Author(s):
Fan DanShi MudanYang YunwenShang Guangdong
Jiangsu Engineering and Technology Research Center for Microbiology,Jiangsu Key Laboratory for Microbes and Functional Genomics,School of Life Sciences,Nanjing Normal University,Nanjing 210023,China
Keywords:
recombineeringknock-outrecombination efficiencySSORDSBR
PACS:
Q819
DOI:
-
Abstract:
Recombineering is a genetic engineering technology for the DNA cloning and modification based on the recombinase-catalyzed homologous recombination.In this study,starting from previous obtained LS-GR,a chromosome-based recombineering strain,the 5’->3’ single stranded DNA exonuclease coding gene recJ and exonucleolytic cleavage in the 3’->5’ DNA exonuclease coding gene sbcB were knocked out via LS-GR’s recombineering function as well as its inherent double strand break repair(DSBR)function.Compared with LS-GR,the obtained strains LS2002 and LS2004 show higher single strand oligonucleotide repair(SSOR)activity and DSBR activities,showing that they have the potential to be used in the recombineering experiments for high recombination efficiency.

References:

[1] Sharan S K,Thomason L C,Kuznetsov S G,et al.Recombineering:a homologous recombination-based method of genetic engineering[J].Nat Protoc,2009,4(2):206-223.
[2]Datsenko K A,Wanner B L.One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products[J].Proc Natl Acad Sci U S A,2000,97(12):6640-6645.
[3]Wang J,Sarov M,Rientjes J,et al.An improved recombineering approach by adding RecA to lambda Red recombination[J].Mol Biotechnol,2006,32(1):43-53.
[4]Lee E C,Yu D,Martinez de Velasco J,et al.A highly efficient escherichia coli based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA[J].Genomics,2001,73(1):56-65.
[5]Song J,Dong H,Ma C,et al.Construction and functional characterization of an integrative form lambda Red recombineering Escherichia coli strain[J].FEMS Microbiol Lett,2010,309(2):178-183.
[6]Fu J,Teucher M,Anastassiadis K,et al.A recombineering pipeline to make conditional targeting constructs[J].Methods Enzymol,2010,477:125-144.
[7]Isaacs F J,Carr P A,Wang H H et al.Precise manipulation of chromosomes in vivo enables genome-wide codon replacement[J].Science,2011,333(6040):348-353.
[8]Murphy K C.Use of bacteriophage lambda recombination functions to promote gene replacement in Escherichia coli[J].J Bacteriol,1998,180(8):2063-2071.
[9]Sawitzke J A,Costantino N,Li X T,et al.Probing cellular processes with oligo-mediated recombination and using the knowledge gained to optimize recombineering[J].J Mol Biol,2011,407(1):45-59.
[10]Maresca M,Erler A,Fu J,et al.Single-stranded heteroduplex intermediates in lambda Red homologous recombination[J].BMC Mol Biol,2011,11:54.
[11]Sambrook J,Fritsch E F,Maniatis T.Molecular Cloning:A Laboratory Manual[M].2nd ed.New York:Cold Spring Harbor Laboratory Press,1989:16-34.
[12]Kolisnychenko V,Plunkett G,Herring C D,et al.Engineering a reduced Escherichia coli genome[J].Genome Res,2002,12(4):640-647.

Memo

Memo:
-
Last Update: 2013-03-31