|Table of Contents|

Molecular Evolution of SLC14A2,a Key Gene for Urea Transporters in Marine Mammals(PDF)

《南京师大学报(自然科学版)》[ISSN:1001-4616/CN:32-1239/N]

Issue:
2022年03期
Page:
79-86
Research Field:
生物学
Publishing date:

Info

Title:
Molecular Evolution of SLC14A2,a Key Gene for Urea Transporters in Marine Mammals
Author(s):
Zeng FanWu TianzhenYu ZhenpengSun LinxiaGuo Tianhui
(School of Life Sciences,Nanjing Normal University,Jiangsu Key Laboratory for Biodiversity and Biotechnology,Nanjing 210023,China)
Keywords:
marine mammalsosmoregulationSLC14A2 genepositive selection
PACS:
Q951+.3
DOI:
10.3969/j.issn.1001-4616.2022.03.011
Abstract:
Convergence evolution is the core scientific issue in evolutionary biology. In order to adapt to the hyperosmotic marine environment,independent-originated-marine mammals have evolved the convergent osmoregulation mechanism through producing highly concentrated urine. In this study,the SLC14A2 gene encoding urea transporter was used as a candidate gene for evolutionary analysis. The results revealed that this gene has undergone significant accelerated evolution in marine mammals. Four positively selected sites(35,463,592,598) were detected by at least two maximum likelihood(ML)methods,and these sites were located or near important functional domains. It indicates that marine mammals may produce highly concentrated urine from enhancing the active transport of urea by kidneys,which is consistent with what has been found in the previous physiological studies. Especially,the study identified 6 parallel/convergent evolutionary sites among different groups of marine mammals,which has provided convergent evidence of marine mammals producing highly concentrated urine to adapt to the marine environment at the molecular level. In addition,the positive selection is mainly focused on the evolutionary lineage of cetaceans,which may be related to cetaceans faced greater osmotic pressure than other marine mammals because cetaceans have adapted to fully aquatic life. In this study,the evolutionary analysis of the SLC14A2 gene in marine mammals provides a convergent molecular mechanism of marine mammals to produce highly concentrated urine for adapting to the hypertonic marine environment.

References:

[1]STORZ J F. Causes of molecular convergence and parallelism in protein evolution[J]. Nature reviews genetics,2016,17(4):239-250.
[2]HU Y,WU Q,MA S,et al. Comparative genomics reveals convergent evolution between the bamboo-eating giant and red pandas[J]. Proceedings of the national academy of sciences,2017,114(5):1081-1086.
[3]黄小富,张泽钧. 大熊猫与小熊猫生态习性的比较:食物、体型大小及系统发育的影响[J]. 四川动物,2008,27(4):212-217.
[4]LI Y,LIU Z,SHI P,et al. The hearing gene Prestin unites echolocating bats and whales[J]. Current biology,2010,20(2):55-56.
[5]KETTEN D R,SIMMONS J A,HUBBARD A E,et al. Dolphin and bat sonar:Convergence,divergence,or parallelism[J]. Journal of the acoustical society of America,2004,115(5):2517-2517.
[6]ZHOU X M,SEIM I,GLADYSHEV V N,et al. Convergent evolution of marine mammals is associated with distinct substitutions in common genes[J]. Scientific reports,2015,5(1):16550-16550.
[7]TIAN R,WANG ZF,NIU X,et al. Evolutionary genetics of hypoxia tolerance in cetaceans during diving[J]. Genome biology and evolution,2016,8(3):827-839.
[8]FOOTE A D,LIU Y,THOMAS G W,et al. Convergent evolution of the genomes of marine mammals[J]. Nature genetics,2015,47(3):272-275.
[9]ZHU K L,ZHOU X M,XU S X,et al. The loss of taste genes in cetaceans[J]. BMC evolutionary biology,2014,14(1):218.
[10]SUN X H,ZHANG Z Z,SUN Y Y,et al. Comparative genomics analyses of alpha-keratins reveal insights into evolutionary adaptation of marine mammals[J]. Frontiers in zoology,2017,14(1):1-8.
[11]陈万青. 海洋哺乳动物[M]. 青岛:青岛海洋大学出版社,1992.
[12]王京真,于学颖,郭爱环,等. 鲸豚类的渗透调节研究进展[J]. 兽类学报,2012,32(2):156-167.
[13]刘仁俊,哈里森 R J. 江豚皮肤的超微结构及其与其它豚类的比较[J]. 水生生物学报,1986,10(1):105-106.
[14]BIRUKAWA N,ANDO H,GOTO M,et al. Plasma and urine levels of electrolytes,urea and steroid hormones involved in osmoregulation of cetaceans[J]. Zoological science,2005,22(11):1245-1257.
[15]ORTIZ R M. Osmoregulation in marine mammals[J]. Journal of experimental biology,2001,204(Pt 11):1831-1844.
[16]XU S X,YANG Y X,ZHOU X M,et al. Adaptive evolution of the osmoregulation-related genes in cetaceans during secondary aquatic adaptation[J]. BMC evolutionary biology,2013,13(1):189-189.
[17]ZHOU X M,GUANG X M,SUN D,et al. Population genomics of finless porpoises reveal an incipient cetacean species adapted to freshwater[J]. Nature communications,2018,9(1):1276.
[18]杨宝学. 尿素通道蛋白的分子生物学和药理学研究[C]//全国生化与分子药理学学术论文集. 山东:全国生化与分子药理学学术会议,2013.
[19]FENTON R A,HOWORTH A,COOPER G J,et al. Molecular characterization of a novel UT-A urea transporter isoform(UT-A5)in testis[J]. American journal of physiology-cell physiology,2000,279(5):1425-1431.
[20]SANDS J M,NONOGUCHI H,KNEPPER M A,et al. Vasopressin effects on urea and H2O transport in inner medullary collecting duct subsegments[J]. American journal of physiology-renal physiology,1987,253(5):823-832.
[21]FRANCO A,POUJOL R,BAURAIN D,et al. Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences[J]. BMC evolutionary biology,2019,19(1):21.
[22]RANWEZ V,DOUZERY E J P,CAMBON C,et al. MACSE v2:toolkit for the alignment of coding sequences accounting for frameshifts and stop codons[J]. Molecular biology and evolution,2018,35(10):2582-2584.
[23]TALAVERA G,CASTRESANA J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments[J]. Systematic biology,2007,56(4):564-577.
[24]YANG Z H. PAML4:phylogenetic analysis by maximum likelihood[J]. Molecular biology and evolution,2007,24(8):1586-1591.
[25]YANG Z H,WONG W S,NIELSEN R. Bayes empirical Bayes inference of amino acid sites under positive selection[J]. Molecular biology and evolution,2005,22(4):1107-1118.
[26]POND S L,FROST S D. Datamonkey:rapid detection of selective pressure on individual sites of codon alignments[J]. Bioinformatics,2005,21(10):2531-2533.
[27]ZOU Z T,ZHANG J Z. Are convergent and parallel amino acid substitutions in protein evolution more prevalent than neutral expectations[J]. Molecular biology and evolution,2015,32(8):2085-2096.
[28]SHAYAKUL C,HEDUGER M A. The SLC14 gene family of urea transporters[J]. European journal of physiology,2004,447(5):603-609.
[29]LONG L E,CHESWORTH R,HUANG X,et al. Transmembrane domain Nrg1 mutant mice show altered susceptibility to the neurobehavioural actions of repeated THC exposure in adolescence[J]. The international journal of neuropsychopharmacology,2013,16(1):163-175.
[30]ZHANG Z R,MCDONOUGH S I,MCCARTY N A. Interaction between permeation and gating in a putative pore domain mutant in the cystic fibrosis transmembrane conductance regulator[J]. Biophysical journal,2000,79(1):298-313.

Memo

Memo:
-
Last Update: 2022-09-15